PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c3_34250V3.2.p
Common NamePHYPADRAFT_233972
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HRT-like
Protein Properties Length: 487aa    MW: 54041.3 Da    PI: 10.146
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c3_34250V3.2.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like43.93.9e-14312341231
           HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        CGv+++ G++C   PvkgRKRC  HKGmR+
  Pp3c3_34250V3.2.p 312 CGVLTDKGIPCDVAPVKGRKRCLHHKGMRV 341
                        *****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd007190.00111103126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0025017anatomyplant spore
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MGVLFYSRTS EEVLVQQRSE WSGVKRRLRR EDCEYVKHDK LFSKWKILVG PSDWSEHSAG  60
KDGIDRYHLH NLPASHFGPG VYELGVTAPS WTPTSHSQRR RSLKREDVLA VYVGQADNIR  120
QRLQQYGQAG SHLEGSGSTK YCRGNDDSVS CGSSSSLRSQ SGDQSGVKRS NSSPRLFSEV  180
FALGSSVAFR WAHTDSKVMA EQVESELLAV FDYAWNKGSN GNRRSRDILA KLFMSWPTND  240
PFCKPVFSGK KFLLCGTNAV GIKVALRKPQ DTSSNSNKSM INTNPCFCMQ MQSPVPANVL  300
TPGKTASMEL RCGVLTDKGI PCDVAPVKGR KRCLHHKGMR VRGVPAAGHP PLVKYTIMDD  360
SMGRVKRESV KVGEGSVCLP IGLQSFFSAK TRIDRNKVPE DEPGERRPLS LSFNTWMKVE  420
SERVHDGLDS SWSCPNGEVK SSLISLYKAS KQDRGQHSGI NAIPNRKVRQ PSCKYTPVPV  480
DDSKRR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.162750.0gametophore| protonema
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001769202.10.0predicted protein
TrEMBLA9SS780.0A9SS78_PHYPA; Predicted protein
STRINGPP1S112_53V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-52effector of transcription2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]